Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs72823677 chr2:102997051 C/T 5.09E-7 490 32 29.07 25.32 KM Plot
PRAD rs72825916 chr2:103070982 C/T 4.66E-7 489 31.43 29.07 25.32 KM Plot
PRAD rs7285566 chr22:18445288 G/A 2.65E-8 494 30.8 32.22 26.03 KM Plot
PRAD rs7286219 chr22:18445709 G/C 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs7286607 chr22:18444657 T/C 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs72905665 chr18:39469716 A/G 6.21E-9 488 29.8 36.58 28.18 KM Plot
PRAD rs7290762 chr22:18449130 C/G 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs7291155 chr22:18444599 C/T 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs7291169 chr22:18449038 A/G 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs7291304 chr22:18421821 C/A 4.11E-5 490 29.23 32.98 24 KM Plot
PRAD rs72946165 chr11:36301556 T/A 8.19E-5 485 31.13 32.47 26.37 KM Plot
PRAD rs72949045 chr2:107457812 G/T 0.000136 490 30.73 31.13 32.63 KM Plot
PRAD rs72963819 chr18:71952516 G/T 7.84E-5 487 31.27 28.23 23.07 KM Plot
PRAD rs72979452 chr3:125756178 C/T 0.000162 477 29.63 34.3 20.03 KM Plot
PRAD rs73012431 chr11:124678632 C/G 1.57E-6 489 30.33 33.07 61.83 KM Plot